MarcelloTruzzi Posted June 21, 2012 Report Share Posted June 21, 2012 Hello, I found these visualization tools. Does anyone use them or use something better? vidaarguslabmolekel Accelrys Discovery Studio VisualizerSTM4 DeepView I guess what I would like is chemistry/atomistic visualization software. Something to show a representation of a hydrogen atom and the bonds with other elements such as oxygen. Maybe even simulate those bonds under different heat/pressure/magnetic/electronic conditions. Or even hydrogen under different isotypes. Also like the ability to show a say 100 atom crystal so I can visualize the structure and how it might interact with other structures, elements or bonds. Are there any out there that can note decay and alpha beta particles? Anyone use or recommend these: GDIS TINKER Accelrys . Thanks in advance. Quote Link to comment Share on other sites More sharing options...
Bolitoglossa Posted August 4, 2013 Report Share Posted August 4, 2013 You can do most of those things with Avogadro, which is free and very straightforward to use. I am not sure about the "simulating those bonds under different heat/pressure", I don't fully understand what you would want to simulate. Unsure about the decay and alpha particles. For electronics, you can use GAMESS to calculate the orbital properties using whatever models/parameters you choose, and then import it into VMD to visualize. For proteins, use PyMol or Chimera. All of these programs are free online. Quote Link to comment Share on other sites More sharing options...
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